Introductory General Chemistry  ·  Unit 03

Atomic Structure

Start here if protons, neutrons, electrons, isotopes, and ions still feel like separate facts. This unit pulls them together into one system you can use, building directly from matter classification and setting up electron configuration.

What you'll learn

Count protons, neutrons, and electrons from atomic symbols and the periodic table. Predict where average atomic mass should land, then calculate it from isotope abundance data. Determine ion charges and write correct ionic symbols. Read chemical formulas, simplify to an empirical formula, and count atoms when parentheses are used.

3.1 Start Here: How the Atomic Model Changed

In the early 1800s, John Dalton proposed the first modern atomic theory based on experimental evidence. Start here with the big idea: scientists kept changing the atomic model when new evidence forced them to. That pattern matters more than memorizing dates.

How Atomic Models Changed

Each new model explained evidence the older one could not.

Dalton's model shown as a single solid sphere.

Dalton

1803

Idea: atom = solid, indivisible sphere

Limit: could not explain electrons

Thomson's model shown as electrons embedded in a positive sphere.

Thomson

1897

Idea: negative electrons embedded in a diffuse positive sphere

Limit: no nucleus and no mostly empty space

Rutherford's model shown as a tiny nucleus with electrons around it and deflected alpha particle paths.

Rutherford

1911

Idea: tiny positive nucleus in mostly empty space

Evidence: gold foil deflections

Later models shown with fixed energy levels and a probability cloud around the nucleus.

Bohr to Quantum

1913 and beyond

Bohr: electrons occupy fixed energy levels

Quantum: electrons are described by probability clouds, not exact paths

Big shift: the atom changed from a featureless sphere to a tiny nucleus with electrons arranged by energy and probability.

Each model replaced the one before it when new experimental evidence appeared — the nuclear model you use today came from that sequence.

Here is what Dalton got right — and what the later models kept from his original theory.

Elements are made of tiny, indivisible particles called atoms.

All matter is ultimately composed of atoms, which cannot be created, destroyed, or divided by ordinary chemical means.

In Dalton's model, all atoms of a given element were identical.

Dalton used this idea to explain why each element behaves in its own consistent way. We now know isotopes exist, but the proton count still defines the element.

Compounds form when atoms of different elements combine in fixed, whole-number ratios.

Water is always 2 hydrogen atoms for every 1 oxygen atom — no matter the source. This explains the law of definite proportions.

In chemical reactions, atoms are rearranged — never created or destroyed.

This is the atomic explanation for the law of conservation of mass. The same atoms are present before and after any reaction; they just bond differently.

That fourth point is the one that shows up in every stoichiometry and reaction unit — conservation of mass starts here.

  • We now know Dalton's theory is not perfectly correct.
  • Isotopes show that not all atoms of the same element are identical.
  • Nuclear reactions can also change one atom into another.
  • For ordinary chemistry, though, Dalton's core idea still works: matter is built from atoms that rearrange in reactions.

3.2 Subatomic Particles: What Scientists Found Inside the Atom

A sequence of experiments in the late 1800s and early 1900s showed that atoms are not indivisible after all. Instead, they contain smaller particles and a tiny dense nucleus. Notice the pattern: each experiment answered a different question about what is inside the atom.

Key experiments that revealed electrons, neutrons, and the nuclear model of the atom, and helped measure particle charge.
Experiment Scientist Discovery
Cathode ray tube J.J. Thomson (1897) Electrons — small, negatively charged particles in all atoms
Oil drop experiment R. Millikan (1909) Measured the fundamental charge of a single electron: −1.602 × 10⁻¹⁹ C
Gold foil experiment E. Rutherford (1911) Small, dense, positively charged nucleus at the center; mostly empty space
Nuclear bombardment J. Chadwick (1932) Neutrons — neutral particles in the nucleus with mass ≈ proton

Keep the big outcome in view: atoms contain electrons outside the nucleus, while protons and neutrons are in the nucleus. The next section turns that idea into the counting rules you will actually use.

Rutherford's gold foil experiment

  • Most alpha particles passed straight through, but a few bounced back nearly 180°.
  • This proved the nuclear model: a tiny dense positive nucleus surrounded by mostly empty space where electrons reside.
Original diagram of Rutherford's gold foil experiment showing most alpha particles passing through and a small number deflecting or bouncing back.
The surprise was the rare sharp deflection. If positive charge had been spread out through the atom, the alpha particles would only have drifted slightly. The few strong turns meant nearly all the positive charge was packed into a tiny nucleus.

Straight through

Most of the atom is empty space.

Slight deflection

Positive charge is concentrated, not spread out.

Rare strong deflection

A tiny dense positive nucleus causes the sharp turn. This is the result that surprised Rutherford most, and it is the one exam questions almost always ask about.

3.3 The Nuclear Atom: Protons, Neutrons, and Electrons

The modern atom has a tiny, dense nucleus containing protons and neutrons, surrounded by electrons in a much larger region of space. The nucleus is extremely small compared with the full atom, which is why Rutherford's results mattered so much.

Do not miss this: most of the counting in this unit comes from only four relationships. If this feels shaky, master those before moving on. Unit 04 builds from this section into how electrons are arranged.

Comparison of the three main subatomic particles with their symbols, charges, masses, and locations.
Particle Symbol Charge Mass (amu) Location
Proton p⁺ +1 1.0073 Nucleus
Neutron n⁰ 0 1.0087 Nucleus
Electron e⁻ −1 0.00055 Outside nucleus
Start Here: Key Relationships
Atomic number (Z) = number of protons
Mass number (A) = protons + neutrons
Neutrons = A − Z
Neutral atom: electrons = protons = Z

The one students miss most often: neutrons. You do not read neutrons from the periodic table — you calculate them as A − Z.

3.4 Atomic Number, Mass Number, and Nuclear Symbols

Every element is defined by its atomic number (Z), which is the number of protons. No two elements share the same Z. The mass number (A) is the total count of protons plus neutrons in the nucleus. Keep the jobs separate: Z identifies the element, A identifies the isotope.

We write nuclear symbols in the form:

Nuclear Symbol Notation
AZX, where X = element symbol, A = mass number, and Z = atomic number
Example: ²³Na means sodium with A = 23 and Z = 11, so neutrons = 23 − 11 = 12.

We also write isotopes using a hyphen notation: sodium-23 or Na-23. Both mean the same thing.

  • The atomic number defines the element.
  • You can change the number of neutrons (isotopes) or electrons (ions) and still have the same element.
  • But change the number of protons and you have a completely different element.

3.5 Isotopes and Average Atomic Mass

Isotopes are atoms of the same element with the same number of protons but different numbers of neutrons. That changes the mass number, not the identity of the element. Most elements exist as a mixture of isotopes in nature, which is why periodic-table atomic masses are usually decimals.

Natural isotopes for hydrogen, carbon, and chlorine with their proton, neutron, and abundance data.
Element Isotope Protons Neutrons Natural Abundance
Hydrogen ¹H (protium) 1 0 99.985%
Hydrogen ²H (deuterium) 1 1 0.015%
Carbon ¹²C 6 6 98.93%
Carbon ¹³C 6 7 1.07%
Chlorine ³⁵Cl 17 18 75.77%
Chlorine ³⁷Cl 17 20 24.23%

Before calculating, make a quick prediction: the average atomic mass must fall between the isotope masses and be closer to the more abundant isotope. This prediction step catches most arithmetic mistakes before they cost you points.

The average atomic mass on the periodic table is a weighted average of all naturally occurring isotopes:

Average Atomic Mass Formula
avg mass = Σ (isotope mass × fractional abundance)
Cl example: (34.969 × 0.7577) + (36.966 × 0.2423) = 35.45 amu
  • Always convert percent abundance to a decimal before multiplying (75.77% → 0.7577).
  • Forget this conversion and the answer comes out about 100 times too large.
  • If your answer is not between the isotope masses, stop. Something went wrong.

3.6 Ions: Atoms with a Charge

A neutral atom has equal numbers of protons and electrons. When electrons are gained or lost, the atom becomes an ion, a charged particle. Start here with the simplest rule: protons stay the same, electrons change.

How gaining or losing electrons changes a neutral atom into a cation or anion.
Change Result Charge Name
Lose electrons More protons than electrons Positive Cation
Gain electrons More electrons than protons Negative Anion
The Electron Count Rule
Electrons = atomic number (Z) − charge
Na⁺: Z = 11, charge = +1, so electrons = 11 − 1 = 10
Cl⁻: Z = 17, charge = −1, so electrons = 17 − (−1) = 18
Ca²⁺: Z = 20, charge = +2, so electrons = 20 − 2 = 18

Notice the sign on Cl⁻: you are subtracting a negative number, so the electron count goes up, not down. That is where most arithmetic mistakes happen.

  • Ions still retain the same atomic number and mass number as the neutral atom.
  • Forming an ion changes the electron count, never the proton count.
  • Common mistake: subtracting charge from neutrons or changing protons. Do not do that.

3.7 Chemical Formulas: Count Atoms Carefully

Chemical formulas use element symbols and subscripts to represent compounds. For this unit, focus on two questions first: which atoms are present and how many of each atom are there. If this feels shaky, slow down here, because formula reading keeps showing up in nomenclature, moles, and stoichiometry later on.

Two formula views you need most in this unit and what each one shows for glucose.
Formula Type Shows Example (glucose)
Molecular formula Exact number of each atom in one molecule C₆H₁₂O₆
Empirical formula Simplest whole-number ratio of atoms CH₂O

Subscripts in formulas apply only to the atom symbol immediately to their left. Parentheses group a unit, and a subscript outside the parentheses multiplies everything inside.

Counting Atoms in Formulas Ca₃(PO₄)₂:
Ca: 3 atoms
P: 1 × 2 = 2 atoms
O: 4 × 2 = 8 atoms
Total = 13 atoms per formula unit
  • Molecular formula means the full count of atoms in one molecule or formula unit.
  • Empirical formula means the simplest whole-number ratio.
  • Always count atoms from the full formula before you simplify to the empirical formula.

3.8 Connecting Atomic Mass to the Mole

One atomic mass unit (amu) is defined as exactly 1/12 the mass of a carbon-12 atom. This tiny unit bridges atomic and laboratory scales through Avogadro's number, the number of particles in one mole (mol). Notice how this section acts like a preview of mole chemistry rather than a full mole lesson.

Key Constants 1 amu = 1.6605 × 10⁻²⁴ g
Avogadro's number: Nₐ = 6.022 × 10²³ particles/mol
Molar mass = atomic/molecular mass expressed in g/mol

If carbon-12 has a mass of 12.000 amu per atom, then exactly 6.022 × 10²³ carbon-12 atoms have a mass of exactly 12.000 grams. This is why the atomic mass in amu numerically equals the molar mass in g/mol.

When you use molar mass in calculations later, the number comes from the periodic table atomic mass — and now you know why it looks the way it does.

  • This connection is the bridge between the microscopic world of individual atoms and the macroscopic world of grams on a balance.
  • It is why chemists measure in moles, which you will build fully in Unit 07.
✦ Practice Problems
Practice particle counting and isotope logic now, before electron configuration adds another layer.
✓ 84-problem bank ✓ Thousands of unique review sets ✓ Instant feedback + worked solutions ✓ Best for fixing proton/neutron/electron mix-ups early
Introductory General Chemistry · Unit 03 · Atomic Structure